Calculate comparison measures between two sets of clustering results

Given two sets of posterior probabilities of membership for clusters, calculate three measures to compare the clustering memberships.

Usage

calc_cluster_comparisons(ppr1, ppr2)

Arguments

ppr1

Posterior probabilities of cluster membership, named row_cluster_probs or column_cluster_probs in the output of clustord. If you have performed biclustering, then ppr1 should be the clustering results for just one of the dimensions i.e. just the row clustering results, or just the column clustering results. The rows of ppr1 give the entries that have been clustered, and each column corresponds to one cluster.

ppr2

Posterior probabilities of cluster membership from a different clustering run, which will be compared to ppr1.

Value

A list with components:

ARI: Adjusted Rand Index.

NVI: Normalised Variation of Information.

NID: Normalised Information Distance.

Details

The three measures are the Adjusted Rand Index (ARI), the Normalised Variation of Information (NVI) and the Normalised Information Distance (NID).

The three measures are documented in

References

Fernández, D., & Pledger, S. (2016). Categorising count data into ordinal responses with application to ecological communities. Journal of agricultural, biological, and environmental statistics (JABES), 21(2), 348–362.